Dorado v2.0.0: no more sup?
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Pawsitively prehistoric
First described from Laos in 2005, the Laotian rock rat Laonastes aenigmamus quickly gained fame as one of the most remarkable “living fossil” discoveries in modern mammalogy. A. Abramov (Zoological I...
Organic
<p>When I hear the word organic, two thoughts immediately come up: organic search and organic chemistry. The latter comes up because it is ingrained in me that organic chemistry is one of the hardest ...
The Perceptron - classifying items into two classes based on numerical input variables
<p>I've been reading Sebastian Raschka's excellent book <a href="https://www.amazon.co.uk/Machine-Learning-PyTorch-Scikit-Learn-learning/dp/1801819319">Machine Learning with PyTorch and Scikit-Learn</...
Benchmarking R based bioinformatics speed across different computer types
<p>As a bioinformatician, or other type of data analyst, we should be using the right tool for the job. There are many types of compute we can use from laptops, desktops, pro workstations, on prem-ser...
AI-guided data visualization of gas prices in different geographical locations across the US over time
In this blog post, I will walk through how I went from a question regarding gas prices in different geographical locations across the US over time, to using AI to help me find the relevant data for my...
Installing Python libraries within virtualenv
<p> Today I learnt how to install Python libraries in a virtual environment (in my case, on the Sanger compute farm), using <a href="https://virtualenv.pypa.io/en/latest/">virtualenv</a>.</p...
Now published: Ten common mistakes that could ruin your enrichment analysis
<p><span style="color: white;"> </span></p><div class="separator" style="clear: both; text-align: center;"><div class="separator" style="clear: both; text-align: center;"><a href="https://blogger...
Workshop alert! Mastering Reproducible Enrichment Analysis
<p> Join us for a 2-part workshop on Mastering Reproducible Enrichment Analysis! đź“Š</p> <p>Presented by Anusuiya Bora and myself, with a focus on reproducibility and best practices.</p> <p>đź“… When:...
The AI Rewrite Dilemma
<p>There have been multiple ongoing efforts (see Appendix below), and <strong>debates</strong>, regarding porting bioinformatics tools to Rust. These include two rewrites of minimap2. Here are some of...