ASHG Posters: The Agony and The Ecstasy
ASHG is a huge meeting, probably the second largest I've ever attended after ASCO. ASBMB is similar in size perhaps, though I think a hair smaller and definitely a bigger than ESHG. And certainly mu...
PacBio: $300 Genome Via Chemistry Update
ASHG is here in Boston, just down the street from Ginkgo's HQ. I'm in a new role in Ginkgo Automation, trying to convince the NGS world that our automation platform is the bee's knees. So excellent ...
RNA velocity in situ infers gene expression dynamics using spatial transcriptomics data
Introduction...
Ship of ThesION
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15th Anniversary
It has been 15 years since I started this blog! As typical with many of my anniversary posts, I reflect on things that I have started to do and/or have learned since the last time I wrote an annive...
Our journey through low-complexity regions
Those who inspect SVs often have probably noticed many SVs fall in low-complexity regions (LCRs) or tandem repeats and they are challenging to call. How many and how challenging? I could not find a...
Analyzing ICE Arrest Data - Part 2
In this blog post, I continue to demonstrate how to analyze publicly available datasets related to U.S. Immigration and Customs Enforcement (ICE). This time, I take advantage of publicly available dat...
Do not repeat yourself: List column to do RNAseq differential expression analysis
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<...Benchmark update: metaMDBG and Myloasm
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A quick look at Roche's SBX
Sequencing by Expansion (SBX) is Roche’s new short-read sequencing technology. Roche released ...