Bioinformatics Blogs

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Closing my tabs, July 10, 2026

From Paired Ends (Stephen Turner's blog) – Fri, 10 Jul 2026 20:38:33 GMT

Off switches for dual-use knowledge, the PhD admissions drop, a Brown cheating mess, the end of reading, AI labs at the bench, and planning for a "Bio Mythos" moment. 1.7k words, 8 min reading time....

The Simulator That Isn't There

From Omics! Omics! – 2026-07-10T09:14:08.954-04:00

Okay, this is one of those cases where I kvetch about other people not having built the tools I want to use - perhaps a bit of a insufferably egotistical position.  I mean, what gives me the chutzpah ...

Countable Labs Raises Funds, Heads to Clinic

From Omics! Omics! – 2026-07-07T11:44:18.444-04:00

<div>I caught up by teleconference recently with Countable Labs CEO Giovanna Prout, fresh off Countable Labs' $26M equity fundraising - a round which was oversubscribed.  Top on my agenda: what is Pro...

Fewer Rungs on the Ladder

From Paired Ends (Stephen Turner's blog) – Mon, 06 Jul 2026 20:18:17 GMT

Automating the analyst's work doesn't turn analysts into principal scientists...

Minibwa is the new bwa-mem

From Heng Li's blog – 2026-07-04T00:00:00+00:00

<p>Preprinted <a href="https://arxiv.org/abs/1303.3997">in 2013</a>, <a href="https://github.com/lh3/bwa">bwa-mem</a> is a popular mapper for 100+ bp short reads. It is often the first choice in varia...

Five things (July 2, 2026): AIxBio, NIH, QED

From Paired Ends (Stephen Turner's blog) – Thu, 02 Jul 2026 09:00:05 GMT

GeneBench-Pro, LLM agents and biological tools, the volition premium, NIH&#8217;s 235 flagged words, QED&#8217;s top 1%...

Test Driving Claude Science

From Paired Ends (Stephen Turner's blog) – Tue, 30 Jun 2026 21:06:43 GMT

Anthropic released Claude Science today. I tried it out for an AIxBio literature review and for an analysis using the IUCN Red List API with R....

Alex Hastie Returns to BioNano, Takes CSO Reins

From Omics! Omics! – 2026-06-28T08:54:17.899-04:00

An interesting news item this week is that BioNano Genomics has appointed Alex Hastie as Chief Scientific Officer.  Hastie is an obvious choice for CSO, as for many years he was very much the public s...