Recent advances in the sourmash ecosystem (August 2024)
<p>sourmash is faster and better than before!</p>...
Recent advances in the sourmash ecosystem (August 2024)
<p>sourmash is faster and better than before!</p>...
Internship in the PIM group
<div> <nav id="TableOfContents"> <ul> <li><a href="https://bacpop.org/blog/index.xml#antoines-experience-at-ebi">Antoine’s experience at EBI</a></li> <li><a href="https://bacpop.org/blog/ind...
FASTQ uploads to ENA FTP site with rclone
<p>I've recently been working what I considered to be a large scale FASTQ upload to the European Nucleotide Archive (ENA), from where it will be mirrored to the NCBS Short or Sequence Read Archive (SR...
ggCaller installation
<div> <nav id="TableOfContents"> <ul> <li><a href="https://bacpop.org/blog/index.xml#installing-ggcaller-from-source">Installing ggCaller from Source</a></li> <li><a href="https://bacpop.org/blog/...
Speeding sourmash the heck up
<p>Faster things are always nice, right?</p>...
Speeding sourmash the heck up
<p>Faster things are always nice, right?</p>...
BLAST max-target-seq meets metabarcoding
<p>This is my first blog post in years - primarily down to a second child who is now a toddler. And what better topic to return to than a mainstay of past content, NCBI BLAST? This time with a motivat...
Observations about Helicos, a single molecule sequencer from 2008
Take a look at the latest blog post from Dale Yuzuki, published on the Silent Valley Consulting website, about a technology from 2008 to 2011 that was the world’s first “true single molecu...
Introducing kyber: minimalistic quality assessment plot for long reads
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